Morpheus 2.3.5

This is the fifth bug fix release of the 2.3 series.

MorpheusML was extended by two valuable features: InitCellObjects learned hexagon/honeycomb shapes and rotation for all shapes. Furthermore, StartTime and StopTime can now be given as expressions, something that we overlooked earlier.

The simulator received an improved integer scale palette selection in Gnuplotter, performance improvements in the PDE solver code, and faster and more efficient memory storage for spatial domains (like cells).

See the blog post and the changelog for details.

Downloads

Table of Contents

Linux

APT Package Manager

Download the appropriate package for your distribution:

Use APT to install with dependencies:

sudo apt install ./morpheus_2.3.5.deb
Use Alien to convert to non-debian packages.

Build from Source

Run the following commands to build Morpheus from source:

git clone https://gitlab.com/morpheus.lab/morpheus.git morpheus
cd morpheus
git checkout v2.3.5
mkdir build
cd build
cmake ..
make && sudo make install

For dependencies and further build instructions, see the README.md in our GitLab repository.

macOS

Homebrew Package Manager

Morpheus is available for macOS 12 ‘Monterey’ and above via Homebrew.

If you are still running macOS 10.15 ‘Catalina’, please check the FAQ.

Install

  1. Install Homebrew.

  2. Install Morpheus by pasting the following commands in a macOS Terminal (depending on your system, this may take a few minutes):

    brew tap morpheus-lab/morpheus
    brew install morpheus

  3. Start the Morpheus GUI with the command:

    morpheus-gui

  4. Optional: To access Morpheus conveniently from your Mac’s ‘Applications’ folder, add a Morpheus.app shortcut by typing:

    ln -sf $(brew --prefix)/opt/morpheus/Morpheus.app /Applications

Detailed instructions and other available Homebrew installation options are provided in the FAQ section.

Upgrade

If you have already installed Morpheus with Homebrew in the past, simply upgrade to the latest version with:

brew upgrade morpheus

Build from Source

Run the following commands to build Morpheus from source:

git clone https://gitlab.com/morpheus.lab/morpheus.git morpheus
cd morpheus
git checkout v2.3.5
mkdir build
cd build
cmake ..
make && sudo make install

For dependencies and further build instructions, see the README.md in our GitLab repository.

Windows

Windows Installer

On Windows, Morpheus is made available through a Windows installer:

Morpheus-2.3.5.exe

If you get the message ‘Windows protected your PC’ and Microsoft Defender SmartScreen is preventing the Morpheus installer from starting as an ‘unrecognized app’, click ‘More info’ and then ‘Run anyway’ and you’re good to go.
Morpheus
Morpheus
Multicellular Simulation
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